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	<title>MEMSuniverse &#187; dynamics</title>
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		<title>U type 1 hole for trapping cells</title>
		<link>http://www.memsuniverse.com/mems/bio-mems/u-type-1-hole-for-trapping-cells.html</link>
		<comments>http://www.memsuniverse.com/mems/bio-mems/u-type-1-hole-for-trapping-cells.html#comments</comments>
		<pubDate>Mon, 26 Jan 2009 08:02:03 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Bio-MEMS]]></category>
		<category><![CDATA[biofluid]]></category>
		<category><![CDATA[bioMEMS]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[CFD]]></category>
		<category><![CDATA[computer]]></category>
		<category><![CDATA[device]]></category>
		<category><![CDATA[dynamics]]></category>
		<category><![CDATA[Lagrangian]]></category>
		<category><![CDATA[Microfluidics]]></category>
		<category><![CDATA[particle]]></category>
		<category><![CDATA[simulation]]></category>

		<guid isPermaLink="false">http://www.memsuniverse.com/?p=1018</guid>
		<description><![CDATA[Using 3T3 cells as a model system, the motion of each individual cell was calculated using a one-way coupled Lagrangian method. The cell was assumed to be a solid sphere, and interactions with other cells were only considered when a cell sedimented in the trap. The ordinary differential equations were solved along the cell trajectory [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://i.ytimg.com/vi/Gf2awY58E7c/2.jpg" align="left" /></p>
<p><span>Using 3T3 cells as a model system, the motion of each individual cell was calculated using a one-way coupled Lagrangian method. The cell was assumed to be a solid sphere, and interactions with other cells were only considered when a cell sedimented in the trap. The ordinary differential equations were solved along the cell trajectory for the three components of the velocity and location vector by using the Rosenbrock method based on an adaptive time-stepping technique.</p>
<p>related article:<br />
Building a Better Cell Trap: Applying Lagrangian Modeling to the Design of Microfluidic Devices for Cell Biology, Min-Cheol Kim, Zhanhui Wang, Raymond H. W. Lam and Todd Thorsen, Journal of Applied Physics, 103 (2008) 044701.  </span></p>
<p>This is an animation of Fig.1C in the paper published in J. Appl. Phys. 103, 044701 (2008).</p>
<p>Duration : <strong>0:1:0</strong></p>
<p><span id="more-1018"></span><br />
</p>
<div class="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.memsuniverse.com/mems/bio-mems/flat-type-seive-for-trapping-cells.html" rel="bookmark" class="crp_title">flat type seive for trapping cells</a></li><li><a href="http://www.memsuniverse.com/microfluidics/cell-trapping-microfluidic-device-2.html" rel="bookmark" class="crp_title">cell trapping microfluidic device 2</a></li><li><a href="http://www.memsuniverse.com/mems/bio-mems/c-type-sieve.html" rel="bookmark" class="crp_title">c type sieve</a></li><li><a href="http://www.memsuniverse.com/microfluidics/case3-90sec.html" rel="bookmark" class="crp_title">cell trapping microfluidic device</a></li><li><a href="http://www.memsuniverse.com/lab-on-chip/mfdep-cell-loading-device-proof-of-concept.html" rel="bookmark" class="crp_title">MFDEP cell loading device proof-of-concept</a></li><li>Powered by <a href="http://ajaydsouza.com/wordpress/plugins/contextual-related-posts/" rel="external nofollow">Contextual Related Posts</a></li></ul></div>]]></content:encoded>
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		<item>
		<title>flat type seive for trapping cells</title>
		<link>http://www.memsuniverse.com/mems/bio-mems/flat-type-seive-for-trapping-cells.html</link>
		<comments>http://www.memsuniverse.com/mems/bio-mems/flat-type-seive-for-trapping-cells.html#comments</comments>
		<pubDate>Sun, 25 Jan 2009 04:03:56 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Bio-MEMS]]></category>
		<category><![CDATA[biofluid]]></category>
		<category><![CDATA[bioMEMS]]></category>
		<category><![CDATA[cell]]></category>
		<category><![CDATA[CFD]]></category>
		<category><![CDATA[computer]]></category>
		<category><![CDATA[device]]></category>
		<category><![CDATA[dynamics]]></category>
		<category><![CDATA[Lagrangian]]></category>
		<category><![CDATA[Microfluidics]]></category>
		<category><![CDATA[particle]]></category>
		<category><![CDATA[simulation]]></category>

		<guid isPermaLink="false">http://www.memsuniverse.com/?p=1012</guid>
		<description><![CDATA[The &#8220;flat-type sieve&#8221; consists of an array of nine sieves arranged in a symmetric diamond-shaped pattern. Under simulated conditions, sieves closer to the chamber entrances captured cells well for both geometries, while the downstream sieves remained empty. related article: Building a Better Cell Trap: Applying Lagrangian Modeling to the Design of Microfluidic Devices for Cell [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://i.ytimg.com/vi/OcAY7tdCarE/2.jpg" align="left" /></p>
<p><span>The &#8220;flat-type sieve&#8221; consists of an array of nine sieves arranged in a symmetric diamond-shaped pattern. Under simulated conditions, sieves closer to the chamber entrances captured cells well for both geometries, while the downstream sieves remained empty.</p>
<p>related article:<br />
Building a Better Cell Trap: Applying Lagrangian Modeling to the Design of Microfluidic Devices for Cell Biology, Min-Cheol Kim, Zhanhui Wang, Raymond H. W. Lam and Todd Thorsen, Journal of Applied Physics, 103 (2008) 044701</span></p>
<p>This is an animation of Fig. 1B in the paper published in J. Appl. Phys. 103, 044701 (2008).</p>
<p>Duration : <strong>0:1:0</strong></p>
<p><span id="more-1012"></span><br />
</p>
<div class="crp_related"><h3>Related Posts:</h3><ul><li><a href="http://www.memsuniverse.com/mems/bio-mems/u-type-1-hole-for-trapping-cells.html" rel="bookmark" class="crp_title">U type 1 hole for trapping cells</a></li><li><a href="http://www.memsuniverse.com/microfluidics/cell-trapping-microfluidic-device-2.html" rel="bookmark" class="crp_title">cell trapping microfluidic device 2</a></li><li><a href="http://www.memsuniverse.com/mems/bio-mems/c-type-sieve.html" rel="bookmark" class="crp_title">c type sieve</a></li><li><a href="http://www.memsuniverse.com/microfluidics/case3-90sec.html" rel="bookmark" class="crp_title">cell trapping microfluidic device</a></li><li><a href="http://www.memsuniverse.com/lab-on-chip/11062009_bigcells-wmv.html" rel="bookmark" class="crp_title">11062009_bigcells.wmv</a></li><li>Powered by <a href="http://ajaydsouza.com/wordpress/plugins/contextual-related-posts/" rel="external nofollow">Contextual Related Posts</a></li></ul></div>]]></content:encoded>
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		</item>
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		<title>OMPF subunit 2 ns BD simulation (top)</title>
		<link>http://www.memsuniverse.com/nanotechnology/ompf-subunit-2-ns-bd-simulation-top.html</link>
		<comments>http://www.memsuniverse.com/nanotechnology/ompf-subunit-2-ns-bd-simulation-top.html#comments</comments>
		<pubDate>Wed, 23 Apr 2008 16:18:59 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Nanotechnology]]></category>
		<category><![CDATA[BD]]></category>
		<category><![CDATA[biochemistry]]></category>
		<category><![CDATA[biophysics]]></category>
		<category><![CDATA[brownian]]></category>
		<category><![CDATA[constrained]]></category>
		<category><![CDATA[dynamics]]></category>
		<category><![CDATA[MD]]></category>
		<category><![CDATA[nanoscience]]></category>
		<category><![CDATA[simulation]]></category>

		<guid isPermaLink="false">http://www.memsuniverse.com/?p=250</guid>
		<description><![CDATA[LINCS implemented for Brownian dynamics simulation tool with non-periodic Poisson solver (PM force) and including Coulombic and Van der Waals interactions (PP force). No explicit constraint on dihedrals/angles in this one. This is an ongoing investigation effort at the Electrical Engineering dept of Arizona State University, by the Computational Bioelectronics group (supported by the National [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://img.youtube.com/vi/HwIZeKTeH8M/2.jpg" align="left" />LINCS implemented for Brownian dynamics simulation tool with non-periodic Poisson solver (PM force) and including Coulombic and Van der Waals interactions (PP force). No explicit constraint on dihedrals/angles in this one.</p>
<p>This is an ongoing investigation effort at the Electrical Engineering dept of Arizona State University, by the Computational Bioelectronics group (supported by the National Institute of Health). Investigated by Mr Alex Smolyanitsky ( ASU EE, shura@asu.edu), Dr. Marco Saraniti (ASU EE, Marco.Saraniti@asu.edu), 3D rendered by Mr. Nicolas Faralli (ASU EE, faranic@asu.edu).</p>
<p>Related article :</p>
<p>S. Aboud, D. Marreiro, M. Saraniti, and R. Eisenberg, &#8220;A Poisson P3M Force Field Scheme for Particle-Based Simulations of Ionic Liquids,&#8221; Journal of Computational Electronics, Vol. 3, No. 2, pp. 117-133, 2004.</p>
<p>Duration : <strong>0:0:34</strong></p>
<p><span id="more-250"></span></p>
<p><center><!--adsense#middle--></center></p>
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		<item>
		<title>OMPF subunit 2 ns BD simulation (side)</title>
		<link>http://www.memsuniverse.com/nanotechnology/ompf-subunit-2-ns-bd-simulation-side.html</link>
		<comments>http://www.memsuniverse.com/nanotechnology/ompf-subunit-2-ns-bd-simulation-side.html#comments</comments>
		<pubDate>Wed, 23 Apr 2008 16:14:59 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Nanotechnology]]></category>
		<category><![CDATA[BD]]></category>
		<category><![CDATA[biochemistry]]></category>
		<category><![CDATA[biophysics]]></category>
		<category><![CDATA[brownian]]></category>
		<category><![CDATA[constrained]]></category>
		<category><![CDATA[dynamics]]></category>
		<category><![CDATA[MD]]></category>
		<category><![CDATA[nanoscience]]></category>
		<category><![CDATA[simulation]]></category>

		<guid isPermaLink="false">http://www.memsuniverse.com/?p=249</guid>
		<description><![CDATA[LINCS implemented for Brownian dynamics simulation tool with non-periodic Poisson solver (PM force) and including Coulombic and Van der Waals interactions (PP force). No explicit constraint on dihedrals/angles in this one. This is an ongoing investigation effort at the Electrical Engineering dept of Arizona State University by the Computational Bioelectronics group (supported by the National [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://img.youtube.com/vi/I2-y0CW8B6k/2.jpg" align="left" />LINCS implemented for Brownian dynamics simulation tool with non-periodic Poisson solver (PM force) and including Coulombic and Van der Waals interactions (PP force). No explicit constraint on dihedrals/angles in this one.</p>
<p>This is an ongoing investigation effort at the Electrical Engineering dept of Arizona State University by the Computational Bioelectronics group (supported by the National Institute of Health)The people (in the order of involvement) are Alex Smolyanitsky (ASU EE, shura@asu.edu), Dr. Marco Saraniti (ASU EE, Marco.Saraniti@asu.edu), 3D rendered by Nicolas Faralli (ASU EE, faranic@asu.edu).</p>
<p>Related article :</p>
<p>S. Aboud, D. Marreiro, M. Saraniti, and R. Eisenberg, &#8220;A Poisson P3M Force Field Scheme for Particle-Based Simulations of Ionic Liquids,&#8221; Journal of Computational Electronics, Vol. 3, No. 2, pp. 117-133, 2004.</p>
<p>Duration : <strong>0:0:34</strong></p>
<p>Duration : <strong>0:0:34</strong></p>
<p><span id="more-249"></span></p>
<p><center><!--adsense#middle--></center></p>
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		<item>
		<title>Nanotube &#8211; nanotube interaction</title>
		<link>http://www.memsuniverse.com/nanotechnology/nanotube-nanotube-interaction.html</link>
		<comments>http://www.memsuniverse.com/nanotechnology/nanotube-nanotube-interaction.html#comments</comments>
		<pubDate>Tue, 22 May 2007 18:06:59 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Nanotechnology]]></category>
		<category><![CDATA[dynamics]]></category>
		<category><![CDATA[interactive]]></category>
		<category><![CDATA[molecular]]></category>
		<category><![CDATA[nanotube]]></category>
		<category><![CDATA[simulation]]></category>

		<guid isPermaLink="false">http://www.memsuniverse.com/?p=215</guid>
		<description><![CDATA[Two (3,3) carbon nanotubes manipulated in real-time. Simulated within Biodesigner/Nanomorph environment using GAFF force field. Duration : 0:0:55 Related Posts:C60 Fullerene and Carbon Nanotube InteractionCarbon nanotube real-time deformationNanotube flightCarbon Nanotube-FuCarbon nanotube cleaning process IIPowered by Contextual Related Posts]]></description>
			<content:encoded><![CDATA[<p><img src="http://img.youtube.com/vi/t-jysi95wb4/2.jpg" align="left">Two (3,3) carbon nanotubes manipulated in real-time.</p>
<p>Simulated within Biodesigner/Nanomorph environment using GAFF force field.</p>
<p>Duration : <b>0:0:55</b> </p>
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